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Guide on Germination, Propagation and Transplant

Planting seeds is a skill that’s often learned early in life—in the soil, that is. If you’re like me, as a kid, you probably had a science class in which you germinated pea seeds in water and paper towels on the window sill. A few days later, after little pale shoots (the hypocotyl and radicle, as we now know) emerged, we gently placed the little pea plants in cups full of dirt, watered them for a few days, and observed how they grew over the following weeks.

The concept is similar in hydroponics; plant a seed, let it germinate, and then off it grows!

…but it’s not quite that simple, is it? No longer is it as easy as plopping some seeds in water and letting them grow.

Let’s start with what we do know and a quick anatomy lesson.

A seed becomes a plant.

It has 5 main parts:

  • The seed coat, or tough outer shell of the seed.

  • The plumule, or first shoots.

  • The hypocotyl, which becomes the stem.

  • The radicle, which becomes the root.

  • And, finally, the cotyledon, which serves as a nutrient bank for the plant until the first true leaves arrive.

When a seed germinates, it is taken from a dormant state to an active one, when the radicle cracks the outer shell and becomes an early root. This can only happen in warm, moist conditions. When we were kids, a glass of water and the sun shining onto the windowsill was enough to do the trick. But the number of seeds required to fill a full-sized hydroponic farm probably won’t fit on your windowsill.

The seed gets its first nutrients from the cotyledon and after that, traditionally, from the soil. But in hydroponics, there is no soil. So what now? There are a few things you’ll need to understand about a plant’s life stages to have a successful hydroponic farm.

The difference between germination, propagation, and transplant

Germination, as we discussed, is the stage during which, under the right conditions, plants break out of their seed shells and become seedlings. It begins when they’re seeds and ends just before the plants develop their external cotyledons. They should be removed from the germination system as soon as you see plant parts protruding from the seed.

Propagation is the term we use to describe the stage during which the seedlings become stronger and develop roots and true leaves. This stage begins as the plants emerge from the seed and ends when the roots have developed st

rongly within the plug. Plants should be transplanted when they have developed 2–3 sets of true leaves.

Transplant is the stage that comes after propagation; it’s when you move your young seedlings into your grow-out system.

During each of these stages, plants require unique environmental conditions depending on which type of crop they are. To break it down simply, there are cool and warm weather crops.

Warm weather plants tend to be largely herbs and fruiting crops: basil, oregano, thyme.

Cool weather plants, on the other hand, are mostly made up of greens: lettuce, kale, swiss chard, spinach, cilantro, fennel, mint.

Specialty crops, like fruits and flowers, have ranges of cool and warm preferences within them as well.

Fruiting crops like tomatoes and peppers prefer warmer conditions, whereas broccoli and peas like cooler temperatures.

Flowers like chamomile and calendula are cooler (or moderate) temperature flowers, while something like chia or echinacea prefers warm conditions.

Note: there are warm and cool weather examples for each crop type (herbs, greens, fruit, etc.), so be sure to double check what conditions your crop choices prefer.

The optimal temperatures will trend lower or higher depending on crop type at each stage of the plant’s growth. This means that some crops can quite successfully be grown concurrently, while others cannot. In addition, there are some special considerations for each stage.

Hydroponic germination dos and don’ts

If your germination chamber reaches extreme temperatures on either side of the spectrum, you will not get good germination rates, if any.

Do not let your seeds or media dry out. Your seeds need to be warm and moist in order to germinate, and forgetting to do so, or letting them get too dry between waterings will likely kill them.

Keeping your germination chamber at a higher humidity will help reduce the likelihood of drying out as well as watering frequency. Using a humidity dome can help the chamber produce its own humidity.

Seeds and seedlings can also be too wet. In this case, the seed usually rots before it has a chance to grow. You’ll know your media is too wet if it’s soggy or falling apart. It should be quite moist, but you should see no water pooling in the tray for extended amounts of time.

How to transplant for good yield

While transplanting, you’ll want to watch out for causing too much of what is known as “transplant shock”. When plants are taken from one environment to another, they are going to be a little bit shocked and will require several hours to bounce back. We can, however, take actions to mitigate the extent to which it damages the plants.

First, never transplant in warm or hot temperatures. Seedlings are sensitive to heat, and even more so when undergoing transplant. This applies to water temperature as well.

Avoid immediately placing the newly transplanted seedlings under light—they’ll be overwhelmed by the new nutrients (anywhere from 1.2–2.0 depending on the crop and environment, and adding light won’t help them recover more quickly.

Transplant when they are just about ready to be watered again. This will be a time when the media is not very wet (though still moist), and will not be expanded into the tray, which can make the plugs easier to remove. That said, when you transplant, the seedlings should go directly into a system that has water running through it.



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